SNP Profiles of EET 399 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CC	TT	CT	AC	TT	GG	CT	CC	AA	GG	CC	AA
1._RUQ_745B	_	_	CC	_	_	_	_	GG	_	CC	_	GG	_	AA
2._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
3._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
4._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
5._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
6._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
7._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
8._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
9._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
10._GC-04-047-3-11	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
11._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
12._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
13._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
14._EET_399_[ECU]	CC	AG	CC	TT	CT	AA	TT	GG	CT	CC	AA	GG	CC	AA
15._RUQ_745	_	AG	CC	TT	_	_	_	GG	_	_	_	_	CC	AA
16._EET_399_[ECU]	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AG
17._RUQ_745	GG	AG	GG	AA	AG	AC	AA	_	_	_	AA	GG	GG	AA
18._RUQ_745	_	_	GG	_	_	_	_	GT	_	CT	_	AA	_	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
1._RUQ_745B	_	_	_	_	_	CG	GT	AA	_	AC	GG	_	_	AC
2._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
3._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
4._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
5._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
6._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
7._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
8._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
9._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	_	CT	AC
10._GC-04-047-3-11	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	_
11._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	_
12._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	_	CT	AC
13._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
14._EET_399_[ECU]	TT	AA	CG	CT	CT	CG	GT	AA	CT	AC	GG	GG	CT	AC
15._RUQ_745	_	_	_	_	TT	CG	GT	_	CT	AC	GG	GG	CT	AC
16._EET_399_[ECU]	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
17._RUQ_745	AA	AA	CG	AG	AG	CG	AC	_	AG	AC	GG	CC	_	AC
18._RUQ_745	_	_	_	_	_	GG	GG	AG	_	CC	CC	_	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
1._RUQ_745B	_	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X
2._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
3._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
4._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
5._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
6._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
7._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	_	GT	AC	AT	GG	X_X	X_X
8._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	_	GT	AC	AT	GG	X_X	X_X
9._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
10._GC-04-047-3-11	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
11._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
12._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	CT	GT	AC	AT	GG	X_X	X_X
13._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	_	GT	AC	AT	GG	X_X	X_X
14._EET_399_[ECU]	AG	GG	AA	CC	GG	GG	CC	_	GT	AC	AT	GG	X_X	X_X
15._RUQ_745	AG	_	AA	CC	GG	GG	CC	CT	GT	AC	_	_	X_X	X_X
16._EET_399_[ECU]	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
17._RUQ_745	_	GG	AA	GG	GG	CC	CC	AG	AC	AC	AT	GG	X_X	X_X
18._RUQ_745	_	_	_	_	AA	_	_	_	_	AC	_	_	X_X	X_X

Input profile: EET_399_[ECU] RUQ_745

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._EET_399_[ECU] RUQ_745B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

3._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

4._EET_399_[ECU] GC-04-047-3-11

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._EET_399_[ECU]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

6._EET_399_[ECU]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

7._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

8._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

9._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

10._EET_399_[ECU] GC-04-047-3-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._EET_399_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._EET_399_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

13._EET_399_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

14._EET_399_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

15._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._EET_399_[ECU]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

18._EET_399_[ECU] RUQ_745

34.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25